bio_reasoning.coordinator module#

class bio_reasoning.coordinator.Configuration(api_key: str, api_base_url: str, model_name: str, stream: bool = True)[source]#

Bases: object

api_key: str#

api_base_url: str#

model_name: str#

stream: bool = True#

to_dict() → Dict[str, Any][source]#

__init__(api_key: str, api_base_url: str, model_name: str, stream: bool = True) → None#

class bio_reasoning.coordinator.Coordinator(*, config: Configuration, system_prompt: str = 'You are a helpful assistant.')[source]#

Bases: object

This is the orchestrator of layers.

__init__(*, config: Configuration, system_prompt: str = 'You are a helpful assistant.') → None[source]#

property reasoning_mode: ReasoningMode#

construct_system_prompt(messages=None, user_question_override=None) → str[source]#: Construct system prompt combining default and reasoning mode prompts, filling in [USER_QUESTION].

query(messages: Sequence[ChatCompletionMessage | dict[str, str]], stream: bool = False, user_question_override: str | None = None) → str[source]#

add_reasoning_mode(reasoning_mode: ReasoningMode) → None[source]#: Add a reasoning mode to the active set.

set_reasoning_modes(reasoning_modes: List[ReasoningMode]) → None[source]#: Set the complete set of reasoning modes.